ssr_primers

ssr_primer

Primer Details for TRINITY_DN84701_c1_g3_i1
(TC)8: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	GTGGATCCAAAGGGGGAAGG	GGCGGATCAGGACATGTTGA	Start: 1015
Tm	60.033	60.108	End: 1202
Size	20	20	188
Primer 2 details
Sequence	GGTGGATCCAAAGGGGGAAG	GGCGGATCAGGACATGTTGA	Start: 1014
Tm	60.033	60.108	End: 1202
Size	20	20	189
Primer 3 details
Sequence	GTGGATCCAAAGGGGGAAGG	AAAGTCATCGGCGGATCAGG	Start: 1015
Tm	60.033	60.179	End: 1211
Size	20	20	197
Primer 4 details
Sequence	GGTGGATCCAAAGGGGGAAG	AAAGTCATCGGCGGATCAGG	Start: 1014
Tm	60.033	60.179	End: 1211
Size	20	20	198
Primer 5 details
Sequence	TGCAACAGCTGTGATCACCT	GTGTGTGCGTGTGTGTGAAA	Start: 1772
Tm	59.891	59.833	End: 2026
Size	20	20	255
(A)17tatatgacctgcctttgaatgtgtcgacccatcctcctgaaactcacga(AG)6: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	GTGGATCCAAAGGGGGAAGG	GGCGGATCAGGACATGTTGA	Start: 1015
Tm	60.033	60.108	End: 1202
Size	20	20	188
Primer 2 details
Sequence	GGTGGATCCAAAGGGGGAAG	GGCGGATCAGGACATGTTGA	Start: 1014
Tm	60.033	60.108	End: 1202
Size	20	20	189
Primer 3 details
Sequence	GTGGATCCAAAGGGGGAAGG	AAAGTCATCGGCGGATCAGG	Start: 1015
Tm	60.033	60.179	End: 1211
Size	20	20	197
Primer 4 details
Sequence	GGTGGATCCAAAGGGGGAAG	AAAGTCATCGGCGGATCAGG	Start: 1014
Tm	60.033	60.179	End: 1211
Size	20	20	198
Primer 5 details
Sequence	TGCAACAGCTGTGATCACCT	GTGTGTGCGTGTGTGTGAAA	Start: 1772
Tm	59.891	59.833	End: 2026
Size	20	20	255
(C)12: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	GTGGATCCAAAGGGGGAAGG	GGCGGATCAGGACATGTTGA	Start: 1015
Tm	60.033	60.108	End: 1202
Size	20	20	188
Primer 2 details
Sequence	GGTGGATCCAAAGGGGGAAG	GGCGGATCAGGACATGTTGA	Start: 1014
Tm	60.033	60.108	End: 1202
Size	20	20	189
Primer 3 details
Sequence	GTGGATCCAAAGGGGGAAGG	AAAGTCATCGGCGGATCAGG	Start: 1015
Tm	60.033	60.179	End: 1211
Size	20	20	197
Primer 4 details
Sequence	GGTGGATCCAAAGGGGGAAG	AAAGTCATCGGCGGATCAGG	Start: 1014
Tm	60.033	60.179	End: 1211
Size	20	20	198
Primer 5 details
Sequence	TGCAACAGCTGTGATCACCT	GTGTGTGCGTGTGTGTGAAA	Start: 1772
Tm	59.891	59.833	End: 2026
Size	20	20	255
(T)10: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	GTGGATCCAAAGGGGGAAGG	GGCGGATCAGGACATGTTGA	Start: 1015
Tm	60.033	60.108	End: 1202
Size	20	20	188
Primer 2 details
Sequence	GGTGGATCCAAAGGGGGAAG	GGCGGATCAGGACATGTTGA	Start: 1014
Tm	60.033	60.108	End: 1202
Size	20	20	189
Primer 3 details
Sequence	GTGGATCCAAAGGGGGAAGG	AAAGTCATCGGCGGATCAGG	Start: 1015
Tm	60.033	60.179	End: 1211
Size	20	20	197
Primer 4 details
Sequence	GGTGGATCCAAAGGGGGAAG	AAAGTCATCGGCGGATCAGG	Start: 1014
Tm	60.033	60.179	End: 1211
Size	20	20	198
Primer 5 details
Sequence	TGCAACAGCTGTGATCACCT	GTGTGTGCGTGTGTGTGAAA	Start: 1772
Tm	59.891	59.833	End: 2026
Size	20	20	255
(A)32: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	GTGGATCCAAAGGGGGAAGG	GGCGGATCAGGACATGTTGA	Start: 1015
Tm	60.033	60.108	End: 1202
Size	20	20	188
Primer 2 details
Sequence	GGTGGATCCAAAGGGGGAAG	GGCGGATCAGGACATGTTGA	Start: 1014
Tm	60.033	60.108	End: 1202
Size	20	20	189
Primer 3 details
Sequence	GTGGATCCAAAGGGGGAAGG	AAAGTCATCGGCGGATCAGG	Start: 1015
Tm	60.033	60.179	End: 1211
Size	20	20	197
Primer 4 details
Sequence	GGTGGATCCAAAGGGGGAAG	AAAGTCATCGGCGGATCAGG	Start: 1014
Tm	60.033	60.179	End: 1211
Size	20	20	198
Primer 5 details
Sequence	TGCAACAGCTGTGATCACCT	GTGTGTGCGTGTGTGTGAAA	Start: 1772
Tm	59.891	59.833	End: 2026
Size	20	20	255

BtChiLCVDb: Bemisia tabaci Asia II 1 transcriptome database in response to chilli leaf curl virus

Primer Details for TRINITY_DN84701_c1_g3_i1

ICAR Data Use Licence